Plant MITE

SE3020624

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_761
Malus domestica
SE3020624
Mutator
MadM11
MDC003690.328:351-516
TAGATATTT
AGATATTTGGGGTGTGATATCCACACACCTCTTTTTATTTCTCCCACACCTTTTTGGTTTTTGGCCGTCGGATC

Secondary structure and sequence

TSD TIR

5'

3'

T        -        A    C                     C          --         G    CG    AGATGAA
 AGATATTT GGGGTGTG TATC ACACACCTCTTTTTATTTCTC CACACCTTTT  TGGTTTTTG CCGT  GATC       
 |||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||  ||||||||| ||||  ||||       T
 TTTATAGA CCCCACAC ATAG TGTGTGGGGAAAAATGAAGAG GTGTGGGGAA  ATTAAAAAC GGCA  CTAG       
         T        G    A                     T          CA         A    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020624

TAGATATTTGGGGTGTGATATCCACACACCTCTTTTTATTTCTCCCACACCTTTTTGGTTTTTGGCCGTCGGATCAGATGAATTGAAGAAGATCAACGGACAAAAATTAACAAGGGGTGTGTGAGAAGTAAAAAGGGGTGTGTAGATAGCACACCCCTAGATATTT

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