Plant MITE

SE3020628

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_765
Malus domestica
SE3020628
Mutator
MadM27
MDC002448.282:2165-2379
TTCTTTCAA
AAGGAATTGGATCCTCCCCGAGGCAAAGTTTCGGAATCCTCCTGATCCATTAACACGGATCGTTGAATTTTGATCTAACGGTTATAATTATTATAATTTTAAATTA

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTC        G       C  G           C  A  C   C     CAT   C                                 T  --TTA     T
       AAGGAATT GATCCTC CC AGGCAAAGTTT GG AT CTC TGATC   TAA ACGGATCGTTGAATTTTGATCTAACGGTTATAA TA     TAATT 
       |||||||| ||||||| || ||||||||||| || || ||| |||||   ||| ||||||||||||||||||||||||||||||||| ||     ||||| T
       TTCCTTAA CTAGGAG GG TCCGTTTCGGA CC TA GAG ACTGG   GTT TGCCTGGTAACTTAAAACTAGATTGCTAATGTT AT     ATTAA 
AACTTTC        A       A  A           A  C  A   A     ATT   A                                 T  CTCTG     A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020628

TTCTTTCAAGGAATTGGATCCTCCCCGAGGCAAAGTTTCGGAATCCTCCTGATCCATTAACACGGATCGTTGAATTTTGATCTAACGGTTATAATTATTATAATTTTAAATTAGTCTCTATTTGTAATCGTTAGATCAAAATTCAATGGTCCGTATTGTTAGGTCAAGAGAATCCCAAGGCTTTGCCTAGGAGAGGATCAAATTCCTTCTTTCAA

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