Plant MITE

SE3020633

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_770
Malus domestica
SE3020633
Mutator
MadM72
MDC007911.129:481-697
AAAGCTATG
AGCTATGGGAATTGGATCCTCTCCTGAGCAGGAGATCAGGATTTTTCTGATCCACTAACACAGACCGTTGGGTATTGATCCAACGGCTACAAATAGAAGATCCTTCTA

Secondary structure and sequence

TSD TIR

5'

3'

 AA    ATG                                                      A A     G   A                  ------------A      A
   AGCT   GGAATTGGATCCTCTCCTGAGCAGGAGATCAGGATTTTTCTGATCCACTAACAC G CCGTT GGT TTGATCCAACGGCTACAA             TAGAAG 
   ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||             |||||| T
   TCGA   CTTTAACCTAGGAGAGGACTCGTTCTCTAGTCCTAGGAGGATTGGGTGATTGTG C GGCAA CTA AATTAGGTTGTTGATGTT             ATCTTC 
GTA    -AA                                                      C C     G   A                  AACAATATTGAAA      C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020633

AAAGCTATGGGAATTGGATCCTCTCCTGAGCAGGAGATCAGGATTTTTCTGATCCACTAACACAGACCGTTGGGTATTGATCCAACGGCTACAAATAGAAGATCCTTCTAAAAGTTATAACAATTGTAGTTGTTGGATTAAAATCGAACGGCCCGTGTTAGTGGGTTAGGAGGATCCTGATCTCTTGCTCAGGAGAGGATCCAATTTCAAAGCTATG

Copy Cancel