Plant MITE

SE3020635

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_772
Malus domestica
SE3020635
Mutator
MadM8
MDC027736.23:4822-4998
TTTTAATTT
TTAATTTGGATAATGCTAGAGAGATCAAATTATTTAAACTAAATTTGCA

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TTT  -  A   C   A         TT             ---------------------TT   AATCAAA      GG   T       T
   TTAA   GG AT ATG TAG GAGATCAAA  ATTTAAACTAAAT                       GCA       TAACGT  TTA TGATGAT 
   ||||   || || ||| ||| |||||||||  |||||||||||||                       |||       ||||||  ||| ||||||| G
   AATT   CC TG TAC ATC CTCTGGTTT  TAAATTTGGTTTA                       CGT       GTTGTA  AAT ATTATTA 
ATT    TTC  A  A   Y   C         --             CAACACAYTGATAYTCTTTTATT   GCAATTA      -A   C       G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020635

TTTTAATTTGGATAATGCTAGAGAGATCAAATTATTTAAACTAAATTTGCAAATCAAATAACGTGGTTATTGATGATTGGATTATTACTAAAATGTTGATTAACGTGCTTATTTTCTYATAGTYACACAACATTTGGTTTAAATTTTGGTCTCCCTAYCATAGTACCCTTTTAATTA

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