SE3050638

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_775
  • Malus domestica
  • SE3050638
  • PIF/harbinger
  • MadP2
  • MDC001517.196:2251-2674
  • TTA
  • AGAGCAACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           AG     TCATTTGCTCGGGGGACGGGCTGCAGGAAGGGGCCCGAGGGCCAGTTGATTCTTCTCCAGCCATGGAGGGCCCGAGTGAGGGTGGGAGCCCGAGCACAAGGGGAGTGGATTGTTGACAGGCCTGCAGCCCGAGGGCCAAGACATTTTTTTATTGTTTTTTGTGTCAGCCCAAGGCCCTACAGCCCATTTCCCT
  AGAGCAACTCC  CCTTC                                                                                                                                                                                                 
  |||||||||||  |||||                                                                                                                                                                                                  
  TCTCGTTGAGG  TGGGA                                                                                                                                                                                                 
AT           --     ACCTCGGGAAGGGGGACCGTTAGGTGATAACTTAGGTGGGATAACTTGTCATTGACGGAAATTACTTATCATTGATGGTAATTACTTATCATTAATGTAAAACGTAGAGGTGGGAACCTCGGCAGGGGGGACCGTTATCCATTATTTTATCATCAAAAAAACAAACAAATTTATTATATTTTATTTTTTTGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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