SE3020639

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_776
  • Malus domestica
  • SE3020639
  • Mutator
  • MadM4
  • MDC011480.209:21365-21550
  • TTTGTTTAG
  • AGAGTAATGCTAGGGAGATTAAATTTAGAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGTTT  A            A          A     -TAAA    T     ---------AAA   ---------  TGTCATCAATAGGAATAAGCAC
       AG GTAATGCTAGGG GATTAAATTT GAGAC     TTTG AAACT            TGA         TG                      
       || |||||||||||| |||||||||| |||||     |||| |||||            |||         ||                      G
       TC CATTACGATCCC CTGATTTAAA CTCTG     AAAC TTTGA            TCC         CA                      
TTTGTTT  C            A          C     TTTCA    T     ATTCRTGTACCT   ACTACTAAC  AATAATGAATTTGCAACTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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