Plant MITE

SE3020641

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_778
Malus domestica
SE3020641
Mutator
MadM11
MDC011753.226:3667-3831
TAAAAATTA
TTAGRRATGTGATATCACACATTTTATTTTATTTTTTACATATTTTTTTAATTTTTGGTCGTCGGATC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAA    RRA    A    -                                --         G    CG    GGATGAA
      TTAG   TGTG TATC ACACATTTTATTTTATTTTTTACATATTTTTT  TAATTTTTG TCGT  GATC       
      ||||   |||| |||| ||||||||||||||||||||||||||||||||  ||||||||| ||||  ||||       T
      AATC   ACAC ATAG TGTGTAGAGTAAAATGAAGAGTGTGTGGAGAA  ATTAAAGAT AGTA  CTAG       
ATTAAA    CCC    G    G                                CT         A    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020641

TAAAAATTAGRRATGTGATATCACACATTTTATTTTATTTTTTACATATTTTTTTAATTTTTGGTCGTCGGATCGGATGAATTGAAGAAGATCAATGAATAGAAATTATCAAGAGGTGTGTGAGAAGTAAAATGAGATGTGTGGATAGCACACCCCTAAAAATTA

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