SE3020644

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_781
  • Malus domestica
  • SE3020644
  • Mutator
  • MadM41
  • MDC008637.243:11577-11798
  • TTTAGTATC
  • TAGTATCAGACTTGGATCCTCTCCTGAGCTAATAGAGAGGATCCTCCTGATCATTAATCATG

Secondary structure and sequence

TSD    TIR
5'



3'
TT  G  TCA  C                      A    G        T              AGTAGTT    TCA                    A AAATAGGGGGTCCTTT
  TA TA   GA TTGGATCCTCTCCTGAGCTAAT GAGA GATCCTCC GATCATTAATCATG       GGTC   TGGATTTTTATCCAACGGCT C                
  || ||   || |||||||||||||||||||||| |||| |||||||| ||||||||||||||       ||||   |||||||||||||||||||| |                 
  AT AT   CT AACCTAGGAGAGGACTCGATTA CTCT CTAGGAGG CTGGTGATTAGTAC       CCGG   ACCTAAAAATAGGTTGCGAT A                
CT  G  TTC  A                      C    A        -              -------    -CA                    - TTAATAATATTGAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End