SE3020647

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_784
  • Malus domestica
  • SE3020647
  • Mutator
  • MadM10
  • MDC015294.68:5099-5300
  • CTTTTTCTT
  • GGAGTAGGATTCTCTCCCCTCTTTTTCCCCTCCCCTTCCCTCCCCTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTTCTT   G                      C  C         C       -  AT    A   TCACGATTAATCCACGTCAACATCTTATATTAA
         GGA TAGGATTCTCTCCCCTCTTTTT CC TCCCCTTCC TCCCCTC CT  TTGA TGG                                 
         ||| |||||||||||||||||||||| || ||||||||| ||||||| ||  |||| |||                                  
         CCT ATCCTAAGAGAGGGGAGGAGAA GG AGGGGAAGG AGGGGAG GA  AGAG TGT                                 
TTCTTTTTC   G                      A  T         T       T  GG    -   AATAGATAAAATAGAAAGAGAAAGATATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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