SE3030648

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_785
  • Malus domestica
  • SE3030648
  • hAT
  • Madh3
  • MDC017297.73:13237-13912
  • CTTCCTAT
  • TAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCCTAT           --     AA C    AACCCGATAACCGCCAGAATGGATTGGATTTGGGTATGAAAATTCGGGTATAGTTTGGGTATGGGGAAAAACCGTGAATATTATTCGGTTATGGTTTTGGATATGGTTATAGGAGTCCCCAATCCATATCCGTACCCAAATCCGAACCGAATAATATATAATATAATTATATGTATATATATGTATTTCATTATTCAACAAATCCATTACCTTGAGAATACAAAAATTGCATTGTGTGAGTTTTATTTTGTGGCAAAGTTCAAAAGTTTTGATATGAATCAAAATCTATGAGAATTTAATAGTATT
        TAGGGATGGCA  ATTCT  C GTTA                                                                                                                                                                                                                                                                                                                  
        |||||||||||  |||||  | ||||                                                                                                                                                                                                                                                                                                                  T
        ATCCCTACTGT  TCTAA  C CAAA                                                                                                                                                                                                                                                                                                                  
TATCCTTC           TA     -- -    CCCCTGCCTTTACGATATAGGTAGAGGTATTGGTGCTTTTAATTGGTATAGGTATTAACGTTTAATTGGTAGCCCATTATAGGTATTGGTATGGGTGGCCTATTACCTAAAGGGTAGCCAATTGCCAATATAGGTAGAAGTAATTATGTTTTTTATATAAGCGGATTAACTGCGTACTATTAAATCATTTATAATTAAAGCAGTAATTTATAAGCTAGATATTTTACTAAATTAATTACCTAGAACACCATGTATTTTTAATTTCGATTTGTAACTATTACAACCAACTAGAAACTATAGAGCGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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