Plant MITE

SE3020649

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_786
Malus domestica
SE3020649
Mutator
MadM111
MDC002841.103:9522-9701
TAATCCAAT
GAGAAATGTTAAGGAGACTCTT

Secondary structure and sequence

TSD TIR

5'

3'

TAATCCAAT                      TCATAA          T  GTAC     A         ------------    T  ACA    TTTA
         GAGAAATGTTAAGGAGACTCTT      TGGGACTCTC AT    TCTCT CCACCTCAT            ATTT TG   CTAT    
         ||||||||||||||||||||||      |||||||||| ||    ||||| |||||||||            |||| ||   ||||     
         CTCTTTACAATTTTTCTGAGAA      ACTCTGAGAG TA    AGAGA GGTGGAGTG            TAAA AC   GATG    
TAACCTAAT                      -TTTTC          -  ----     C         TCAAATTCCATT    C  ACG    TAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020649

TAATCCAATGAGAAATGTTAAGGAGACTCTTTCATAATGGGACTCTCTATGTACTCTCTACCACCTCATATTTTTGACACTATTTTATAATGTAGGCACACAAATTTACCTTAAACTGTGAGGTGGCAGAGAATGAGAGTCTCACTTTTAAGAGTCTTTTTAACATTTCTCTAATCCAAT

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