Plant MITE

SE3030652

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_789
Malus domestica
SE3030652
hAT
Madh8
MDC016719.242:7939-8575
CTCTGCAT
TGCA

Secondary structure and sequence

TSD TIR

5'

3'

CTC    -TCAG -       G  TT  ----------     AGCTGACCTCCCGAACTTCAATGAATGTTCAGGAATAACTTGAGTGTTGATCCTCCGAACTTCGATGATTGTCCATGAATGATTTGGGTGTTGATCCTTTAAAGGTTGGAGTTACCCTTCATATATACCTTTCAACTGCTTGTAAAATGCATTAGAGAGGCGTTGCCCGTTTACATTTTAGTCATAATATTATTTGCTTTTGGCTTGTTTGTTAGTTGTGATTACAATTGTAGGCAGAAAAAAAAAACCAAGTAAAAAACTATCCAAAAATGCAAAGTAAATG
   TGCA     G GGCGGAT CA  GA          GGGTC                                                                                                                                                                                                                                                                                           
   ||||     | ||||||| ||  ||          |||||                                                                                                                                                                                                                                                                                            
   ACGT     C CTGCCTA GT  CT          CCCTA                                                                                                                                                                                                                                                                                           
  T    CTCGA A       A  -T  TTATTATAAT     GCCGTTTTTAACGCACGTCACACGTTTAAAAAAAATTGTCTTTATCATACGTATAGCAGTAAAGTAGCTCAGGACCATCCGGACTTTAGTAAACCTTTTTGTATAATGTGTGAACAATTACGGAGTAAATGTACCCATTGGTTGTACAAGGTTCCGATGAGGGTATACTTACGAATTGTTTCTTTGTGTGAATTTGTGTGAGTGTTACAAACTATAGTAACGTAGGGTAATTTTATAAACAGATTCTTACTACTACAATACAATAAGAGATTCTAGTGGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030652

CTCTGCATCAGGGGCGGATGCATTGAGGGTCAGCTGACCTCCCGAACTTCAATGAATGTTCAGGAATAACTTGAGTGTTGATCCTCCGAACTTCGATGATTGTCCATGAATGATTTGGGTGTTGATCCTTTAAAGGTTGGAGTTACCCTTCATATATACCTTTCAACTGCTTGTAAAATGCATTAGAGAGGCGTTGCCCGTTTACATTTTAGTCATAATATTATTTGCTTTTGGCTTGTTTGTTAGTTGTGATTACAATTGTAGGCAGAAAAAAAAAACCAAGTAAAAAACTATCCAAAAATGCAAAGTAAATGAAATGGTGATCTTAGAGAATAACATAACATCATCATTCTTAGACAAATATTTTAATGGGATGCAATGATATCAAACATTGTGAGTGTGTTTAAGTGTGTTTCTTTGTTAAGCATTCATATGGGAGTAGCCTTGGAACATGTTGGTTACCCATGTAAATGAGGCATTAACAAGTGTGTAATATGTTTTTCCAAATGATTTCAGGCCTACCAGGACTCGATGAAATGACGATATGCATACTATTTCTGTTAAAAAAAATTTGCACACTGCACGCAATTTTTGCCGATCCCTAATATTATTTCTTGAATCCGTCACAGCTCTGCAT

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