SE3020653

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_790
  • Malus domestica
  • SE3020653
  • Mutator
  • MadM112
  • MDC010168.197:34709-35475
  • TTTAGAATC
  • TTTAGAATCGAGGAAATGGGAGGAATTGTCCCTAAATTATGATCCAATTGTAGCTTTGATTCATAAATTAAAAATTTATTATATTTGATCCTTAAACTTGATTAAATGTGGAGGAATAGTCCTTCGTAACCAATTCCGTTAAATTTTAGTTAA

Secondary structure and sequence

TSD    TIR
5'



3'
         ATC        G           C   A          C             A   A       A          T     -A    TA        T          G ATA       GTA  C   T    TAA     -A     -AAATG   ACTTGTTAGTGAAAAGTGTGTACAGTAGAAAGTGCAGGCCTACCTCATCCCACCAACACTTGTAGCCCACCCTTCACCTTCAATCTTTGATACAGTACTCCCCGCCAACCTCCCACTTCCAACCCCCAATCGCTAATGCCTACTCCCTAGCAGATCCCAATCTGTAACCCACGGACCACTGCCTTCACCCGAAATCCGAACCTGCATCCCACAAAATTCTT
   TTTAGA   GAGGAAAT GGAGGAATTGT CCT AATTATGATC AATTGTAGCTTTG TTC TAAATTA AAATTTATTA ATTTG  TCCT  AACTTGAT AAATGTGGAG A   GTCCTTC   AC AAT CCGT   ATTTT  GTTAA      TTT                                                                                                                                                                                                                             
   ||||||   |||||||| ||||||||||| ||| |||||||||| ||||||||||||| ||| ||||||| |||||||||| |||||  ||||  |||||||| |||||||||| |   |||||||   || ||| ||||   |||||  |||||      |||                                                                                                                                                                                                                             G
   AGATTT   CTCCTTTA CCTCTTTAACA GGA TTGATACTAG TTAACATCGAAAC AGG ATTTAAT TTTAAGTAAT TAAAC  AGGA  TTGAATTA TTTACACCTC T   CAGGGAG   TG TTG GGCA   TAAAA  CAATT      CTG                                                                                                                                                                                                                             
CTA      ---        A           A   C          C             C   A       C          C     CA    -C        T          G AAC       GTA  A   T    CTC     GA     AAACTA   CACCAGAAACACCCGAAGTATAAAAGATAATTGAGAGAGAGAGAGGGGGTAGAAGGGAAGGCGGAGTGGGAGGAGGTTTGGGGTCGGTATGGTAACATCGTGAGAGGGTTGTTGGTTTTATTTTCTTTCAAAGATTAGGTTTAAACCTTGTGAAGAGACCTAGAGGGAAACGTTTGCTTAAGTGTTACTGTAGGTAGGTGCGACAGAGCTGTATATTCTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End