Plant MITE

SE3020654

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_791
Malus domestica
SE3020654
Mutator
MadM15
MDC006457.144:7241-7457
GAAAATAAG
GAAGAGATCCCGTCCAGATTTCTCCCACCAAAACCCACCAATCAATTAATCCGAACTCTTGAAATTTGATCAAACCGTTA

Secondary structure and sequence

TSD TIR

5'

3'

GAAAATAAGAG           G   A     C          A                    AAC               A   C    CAAATA  GGGTCCATTTAA
           GAAGAGATCCC TCC GATTT TCCCACCAAA CCCACCAATCAATTAATCCG   TCTTGAAATTTGATC AAC GTTA      GG            
           ||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||   ||||||||||||||| ||| ||||      ||            A
           CTTCTCTAGGG AGG CTAAA AGGGTGGTTT GGGTGGTTAGTTAATTAGGC   GGAACTTTAAACTAG TTG CGAT      TT            
GAATAAAAGCA           A   C     A          C                    CTA               G   A    ------  TAATAATATTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020654

GAAAATAAGAGGAAGAGATCCCGTCCAGATTTCTCCCACCAAAACCCACCAATCAATTAATCCGAACTCTTGAAATTTGATCAAACCGTTACAAATAGGGGGTCCATTTAAAAGTTATAATAATTTTAGCAGTTGGATCAAATTTCAAGGATCCGGATTAATTGATTGGTGGGCTTTGGTGGGAAAAATCCGGAAGGGATCTCTTCACGAAAATAAG

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