Plant MITE

SE3050663

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_800
Malus domestica
SE3050663
PIF/harbinger
MadP14
MDC017742.256:7741-7989
TTT
GGGCCTGTTTGGTGGGCTGGTTGGGATAGGTTGTGACCAATTAAAATGGACTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTT  G                 T      A  T G   CCA  TA       C   -----A     ----   CGTTGGTTGTTGTGTCAAAATGTGAGATGGACAGGACTGGACATGATGGGTTAT
   GG CCTGTTTGGTGGGCTGG TGGGAT GG T TGA   AT  AAATGGA TTG      GTCCA    GTC                                                      
   || ||||||||||||||||| |||||| || | |||   ||  ||||||| |||      |||||    |||                                                      G
   CC GGACAAACCACCCGACC ACCCTA CC G ACT   TA  TTTACCT AAC      TGTAC    TGT                                                      
TTT  G                 T      A  C G   CCC  TC       -   CGTCCC     ATTC   CCTGAACATTGGGTACAAATTCCTATCCAATCTTTTGGGTGAGATAACACCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050663

TTTGGGCCTGTTTGGTGGGCTGGTTGGGATAGGTTGTGACCAATTAAAATGGACTTGAGTCCAGTCCGTTGGTTGTTGTGTCAAAATGTGAGATGGACAGGACTGGACATGATGGGTTATGAATCCACAATAGAGTGGGTTTTCTAACCTATCCTTAAACATGGGTTACAAGTCCTGTCTTACATGTCCCTGCCAATCCATTTCTATCCCTCAGGCCCAATCCCATCCAGCCCACCAAACAGGGCCTTT

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