SE3020664

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_801
  • Malus domestica
  • SE3020664
  • Mutator
  • MadM11
  • MDC011837.83:12104-12266
  • AAAATTTAG
  • TTTAGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCTTTTTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAA            A             C                      -T      TCGG    CG    AGATGAA
    TTTAGGGGTGTG TATCCACACACCC ATTTTACTTCTCACACACCTTT  TAATTT    CTGT  GATC       
    |||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||||    ||||  ||||       T
    AAATCCCCACAC ATAGGTGTGTGGG TAAAATGAAGAGTGTGTGGGAA  ATTAAA    GGCA  CTAG       
TTTA            G             A                      CT      TACA    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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