Plant MITE

SE3020665

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_802
Malus domestica
SE3020665
Mutator
MadM15
MDC010129.312:11232-11448
GTGAATGAA
GGAAAGGGATCCTTTCCGGACCCCTTCCACCTAATCCTCCTCATCAAATAATCCGGACCCTTGAAATTTGATCTAACGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

GTGAATGAA           C        C  C            C                C    C                       CAAACACAGGCCCACTTTAA      T
         GGAAAGGGATC TTTCCGGA CC TTCCACCTAATC TCCTCATCAAATAATC GGAC CTTGAAATTTGATCTAACGGCTA                    AAGTTA 
         ||||||||||| |||||||| || |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||                    |||||| A
         CCTTTCTCTAG AGAGGCCT GG AAGGTGGATTAG AGGAGTAGTTTGTTAG TCTG GAACTTTAGACTAGATTGCCGAT                    TTCAAT 
GAGTAAGTG           T        A  T            A                T    A                       --------------------      A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020665

GTGAATGAAGGAAAGGGATCCTTTCCGGACCCCTTCCACCTAATCCTCCTCATCAAATAATCCGGACCCTTGAAATTTGATCTAACGGCTACAAACACAGGCCCACTTTAAAAGTTATAATAACTTTAGCCGTTAGATCAGATTTCAAGAGTCTTGATTGTTTGATGAGGAAGATTAGGTGGAATGGATCCGGAGATGATCTCTTTCCGTGAATGAG

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