SE3020672

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_809
  • Malus domestica
  • SE3020672
  • Mutator
  • MadM10
  • MDC000389.218:15112-15337
  • TTTGACGAG
  • TTGACGAGGGACAAGGATTGTCTGCCCCTCCACTTTCGGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
T   A          G            C              CCCCTCGTGTC         -                A                     CTATTCATTTT   CTT
 TTG CGAGGGACAA GATTGTCTGCCC TCCACTTTCGGTGC           CTCCTGTTT GTGTGGTCACGGTTAA CCATGTCAACATTTTATATTA           TGT   
 ||| |||||||||| |||||||||||| ||||||||||||||           ||||||||| |||||||||||||||| |||||||||||||||||||||           |||    
 AGC GTTTCCTGTT CTAACAGACGGG AGGTGAAGGCCACG           GAGGACAAA CACACCAGTGCCAATT GGTGCAGTTGTAAAATATAAT           ATA   
G   A          A            -              ----------A         A                C                     AAAAAATATCT   TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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