Plant MITE

SE3020677

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_814
Malus domestica
SE3020677
Mutator
MadM41
MDC003175.197:18845-19045
CTTGGGGGT
CTTGGGGGTGGATTTGGATCCTCTCCTGAGCTAATGGAGAGATCCTCCTGACCAGTTATTATG

Secondary structure and sequence

TSD TIR

5'

3'

     G    TG                               -   CTC                AGCC        ATAA     A    -    ---AA   AC
  CTT GGGG  GATTTGGATCCTCTCCTGAGCTAATGGAGAG ATC   CTGACCAGTTATTATG    GTTGGATT    TTATT TAAC TTTA     GGG  
  ||| ||||  ||||||||||||||||||||||||||||||| |||   ||||||||||||||||    ||||||||    ||||| |||| ||||     |||   
  GGG TTCC  CTAAACCTAGGAGAGGACTCGATTACCTCTC TAG   GACTGGTCAATAGTAC    CAACCTAA    AATAG GTTG AAAT     TCC  
TG   G    --                               C   AAA                ACAY        ---A     -    C    GTTTG   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020677

CTTGGGGGTGGATTTGGATCCTCTCCTGAGCTAATGGAGAGATCCTCCTGACCAGTTATTATGAGCCGTTGGATTATAATTATTATAACTTTAAAGGGACTTCCTGTTTGTAAACGTTGGATAAAAATCCAACYACACATGATAACTGGTCAGAAAGATCCTCTCCATTAGCTCAGGAGAGGATCCAAATCCCTTGGGGGT

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