Plant MITE

SE3020678

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_815
Malus domestica
SE3020678
Mutator
MadM10
MDC000654.463:4140-4378
TTGTTGATG
GTTGATGGGACCTAGATTGTCTGCCCTCCCCCATCCTATACTCTTCCCATCCCCTCATATTTATGTGGTCACGGTTAAGCCAAGTCAACATTTTATATTCCCATTGCTTTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

TT       -    CTA         C    C CC             CC      C  A     A                   A T              CCC   GC       CTTATT
  GTTGATG GGAC   GATTGTCTG CCTC C  ATCCTATACTCTT  CATCCC TC TATTT TGTGGTCACGGTTAAGCCA G CAACATTTTATATT   ATT  TTTTTGT      
  ||||||| ||||   ||||||||| |||| |  |||||||||||||  |||||| || ||||| ||||||||||||||||||| | ||||||||||||||   |||  |||||||       
  TAGTTGT CCTG   CTAACAGAC GGAG G  TAGGGTATGGGAA  GTAGGG AG ATAAA ACACCAGTGCCAATTCGGT C GTTGTAAAATATAA   TAA  AAAAATA      
 G       T    AAC         A    A -A             AA      A  G     A                   G R              --C   --       TTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020678

TTGTTGATGGGACCTAGATTGTCTGCCCTCCCCCATCCTATACTCTTCCCATCCCCTCATATTTATGTGGTCACGGTTAAGCCAAGTCAACATTTTATATTCCCATTGCTTTTTGTCTTATTATTTTTATAAAAAAATCAATATAAAATGTTGRCGTGGCTTAACCGTGACCACAAAAATAGGAAGGGATGAAAAGGGTATGGGATAGAGAGGACAGACAATCCAAGTCCTTGTTGATG

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