SE3020679

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_816
  • Malus domestica
  • SE3020679
  • Mutator
  • MadM11
  • MDC023802.54:40474-40639
  • TTAAAAAAA
  • AAAGGGTGTGATATCCACACACCCCTTTTTACTTCTCCCACATCTTTTTGGTTTTCGGTCGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAA       -   A                          C          ----------------        ----GG     ACA
       AAAGGGT GTG TATCCACACACCCCTTTTTACTTCTC CACATCTTTT                TGGTTTTC      TCGTC   
       ||||||| ||| |||||||||||||||||||||||||| ||||||||||                ||||||||      |||||    
       TTTCCCA CAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGTGGGGAA                ACTAGAAG      AGTAG   
 AAAAAA       A   G                          T          CAATTAAAGACAGGCA        AAGTTA     GCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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