SE3020682

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_819
  • Malus domestica
  • SE3020682
  • Mutator
  • MadM57
  • MDC006113.280:5556-5816
  • CTCAAAAAG
  • AGGGATTTGGATCCTCGCTGGATCCCCTTCCTGGGGATCCTAAGGATCAACGTACGTGGACCGTTAATTAAAAATTRTGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCAAAA               CG             C                   C       G      A  T       R     CCAC     TTTTYTY     A      TCATA     --C   GC
       AGGGATTTGGATCCT  CTGGATCCCCTTC TGGGGATCCTAAGGATCAA GTACGTG ACCGTT AT AAAAATT TGTGG    CAATT       TTTTT TATTTT     TAAAA   GAG  
       |||||||||||||||  ||||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||| |||||    |||||       ||||| ||||||     |||||   |||   
       TCCCTAAACCTAGGA  GGCTTAGGGGAGG ATCCCTAGGATTCTTAGTT CGTGCAC TGGCAA TA TTTTTAA ACGCC    GTTAA       AAAAA ATAAAA     ATTTT   TTC  
GAAAAAC               AY             A                   A       Y      C  T       C     -AAT     -TTTACA     C      -----     CAT   GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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