Plant MITE

SE3020683

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_820
Malus domestica
SE3020683
Mutator
MadM10
MDC010186.400:14099-14280
CACGGGAAG
GAGTAGGATTCTCTTCCTTCAWTTTTTCCCTCCCCTCTT

Secondary structure and sequence

TSD TIR

5'

3'

CACGGGAAGG  G       C      T  AW       C         ATTTG     TCACAGTTAAGCCACGTCAACATCTTATATTAAT
          GA TAGGATT TCTTCC TC  TTTTTCC TCCCCTCTT     AACTG                                  
          || ||||||| |||||| ||  ||||||| |||||||||     |||||                                   
          CT ATCCTAA AGAGGG AG  AGAAAGG AGGGGAGGA     GTGTA                                  
GAAGGGCACR  G       A      Y  -G       T         ---GA     AGAGATAAAATAGAAAGAGAAAGATATTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020683

CACGGGAAGGGAGTAGGATTCTCTTCCTTCAWTTTTTCCCTCCCCTCTTATTTGAACTGTCACAGTTAAGCCACGTCAACATCTTATATTAATTTTTTTTTATAGAAAGAGAAAGATAAAATAGAGAATGTGAGAGGAGGGGATGGAAAGAGGAYGGGAGAAAATCCTAGTCRCACGGGAAG

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