SE3020694

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_831
  • Malus domestica
  • SE3020694
  • Mutator
  • MadM115
  • MDC017013.542:7062-7222
  • AAAATATAG
  • GGGTGGTATTATTCTTACGCTTATTTTTACTTCTTACAGACTTCTCTCAATTTTTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATATA       A      TT      A        T      G   -------------------------   C       -      GT
        GGGTGGT TTATTC  ACGCTT TTTTTACT CTTACA ACT                         TCT TCAATTT TTTGTT  
        ||||||| ||||||  |||||| |||||||| |||||| |||                         ||| ||||||| ||||||  C
        CCTATCA GATAAG  TGTGAA AAAAATGA GAGTGT TGA                         AGA AGTTAAG AAGCAA  
ATATAAAA       A      --      G        -      G   GAACAATTAAAAACAAGTAACTAGA   -       T      AG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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