SE3020696

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_833
  • Malus domestica
  • SE3020696
  • Mutator
  • MadM4
  • MDC010242.357:177-363
  • TAAATTTAT
  • TAAATTTATGAGTAATGCTAGGAAGATTAAATTTATAGACTAAATTAGCAAACCAAATGAGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
         T             A           A           A C    C      G   TCACCAATAAA     AGCACGTTTKTAAAAA
 TAAATTTA GAGTAATGCTAGG AGATTAAATTT TAGACTAAATT G AAAC AAATGA GTG           AAATG                
 |||||||| ||||||||||||| ||||||||||| ||||||||||| | |||| |||||| |||           |||||                 
 ATTTAAAT CTCATTACGATCC TCTGATTTAAA ATCTGATTTAA C TTTG TTTACT TAC           TATTA                
T        -             C           C           - A    A      A   ----CTTCAAC     ACCTAATAATGAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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