SE3020700

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_837
  • Malus domestica
  • SE3020700
  • Mutator
  • MadM5
  • MDC019333.280:3769-3957
  • ATGAATGAG
  • ATGAGGAGAAATTTTTAATTGTGACGGGAACATGAGTGGTACATCATGTGTTTTTATGTAAGTGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
    ATGA     G   AA     AAT     -   GA       -       T        T       A      ----------    ATTTTATTTTTTA
        ATGAG AGA  TTTTT   TGTGA CGG  ACATGAG TGGTACA CATGTGTT TTATGTA GTGGTG          AAGA             
        ||||| |||  |||||   ||||| |||  ||||||| ||||||| |||||||| ||||||| ||||||          ||||             A
        TACTC TCT  AAAAA   ACACT GCC  TGTGCTC ACCATGT GTGCACAG GATATGT TACCAC          CAAT             
GGAGTAAG     -   --     RTC     R   -G       C       T        T       Y      CCTATACACA    TTTTCAATTATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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