Plant MITE

SE3020702

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_839
Malus domestica
SE3020702
Mutator
MadM4
MDC017714.168:20793-20968
ATTTGAAAA
TTTGAAAAGGGTAATGCTAGGGAGACTAAATGTGTAGACTAAATTTTGTAAACTAAATGACATGGAAGTTGATGATTGA

Secondary structure and sequence

TSD TIR

5'

3'

A   G   A             GA        G            TT   -AA     ------    -     A       GA    ATTA
 TTT AAA GGGTAATGCTAGG  GACTAAAT TGTAGACTAAAT  TGT   ACTAA      ATGA CATGG AGTTGAT  TTGA    
 ||| ||| |||||||||||||  |||||||| ||||||||||||  |||   |||||      |||| ||||| |||||||  ||||     
 AAA TTT CCCATTACGATCC  CTGATTTA ACGTTTGATTTA  ACA   TGGTT      TATT GTACC TTAGTTG  AATT    
A   G   A             AA        A            CT   CAG     ATTCTT    C     A       TG    CATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020702

ATTTGAAAAGGGTAATGCTAGGGAGACTAAATGTGTAGACTAAATTTTGTAAACTAAATGACATGGAAGTTGATGATTGAATTATTACTTAAGTGTTGATTACCATGCTTATTTCTTATTGGTGACACATCATTTAGTTTGCAAATTTAGTCAACCTAGCATTACCCATTTGAAAA

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