Plant MITE

SE3020703

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_840
Malus domestica
SE3020703
Mutator
MadM43
MDC023174.46:10128-10365
ATTTTTTAC
GGACAAGGATTGTCTGCCCTCCCTTTTTCCATGCCCTTCCATGCCCTCATGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTTAC                                      C    C          -                       C              CTATTCATGTTTGTCTT
         GGACAAGGATTGTCTGCCCTCCCTTTTTCCATGCCCTT CATG CCTCATGTTT GTGTGGTCACGGTTAAGCCACGT AACATTTTATATTA                 
         |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||                 A
         CCTGTTCCTAACAGACGGGAGGGAAAAAGGTACGGGAA GTAC GGAGTACAAA CACACCAGTGCCAATTCGGTGCA TTGTAAAATATAAT                 
CATTTTTTA                                      A    A          A                       A              TAAAAAATATTTCTATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020703

ATTTTTTACGGACAAGGATTGTCTGCCCTCCCTTTTTCCATGCCCTTCCATGCCCTCATGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTACTATTCATGTTTGTCTTATTATCTTTATAAAAAATTAATATAAAATGTTAACGTGGCTTAACCGTGACCACACAAAACATGAGGACATGAAAGGGCATGGAAAAAGGGAGGGCAGACAATCCTTGTCCATTTTTTAC

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