SE3020705

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_842
  • Malus domestica
  • SE3020705
  • Mutator
  • MadM20
  • MDC020340.326:461-677
  • CTTTTGTTC
  • GGATTTTGATCCTCTCATGAGCTAATGGAGAGGATCCTCATGACCCATCATCTTGAGCCGTTGGATTTTTATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTGTTC      T         A                      A            T  A                          -------------CAAAT    GG
         GGATTT GATCCTCTC TGAGCTAATGGAGAGGATCCTC TGACCCATCATC TG GCCGTTGGATTTTTATCCAACGGCTA                  AGGG  
         |||||| ||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||                  ||||   
         CCTAAA CTAGGAGAG ACTCGATTACCTCTCCTAGGAG ACTGGGTAGTAG AC CGGCAACCTAAAAATAGGTTGCCGAT                  TCCC  
CTTGTTTTC      C         A                      G            T  C                          ATTAATAATATTGAAATT    TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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