Plant MITE

SE3020706

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_843
Malus domestica
SE3020706
Mutator
MadM78
MDC005475.331:6380-6595
AATTTAAAG
TTTAAAGGGAAGAGGATCCTCTCCTGAGCTCAGGATGAGGACCTTCTTGACTAGCCAATCTGAGTCGTTCAAATTTAATTCAACA

Secondary structure and sequence

TSD TIR

5'

3'

AA      -G                C             A   C              A     A -  G        T         -     AAACARGGAGCCCTC
  TTTAAA  GGAAGAGGATCCTCTC TGAGCTCAGGATG GGA CTTCTTGACTAGCC ATCTG G TC TTCAAATT AATTCAACA GCTCC               
  ||||||  |||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| | || |||||||| ||||||||| |||||               T
  AAATTT  CCTTCTCCTAGGAGAG ACTCGAGTTCTAC CCT GGAGGACTGGTCGG TAGAC C GG AAGTTTGA TTAGGTTGT AATGT               
 G      AA                A             C   A              G     - Y  A        R         C     TAATAATATTRAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020706

AATTTAAAGGGAAGAGGATCCTCTCCTGAGCTCAGGATGAGGACCTTCTTGACTAGCCAATCTGAGTCGTTCAAATTTAATTCAACAGCTCCAAACARGGAGCCCTCTAAAARTTATAATAATTGTAACTGTTGGATTRAGTTTGAAAGGYCCAGATGGGCTGGTCAGGAGGATCCCCATCTTGAGCTCAAGAGAGGATCCTCTTCCAATTTAAAG

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