SE3020710

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_847
  • Malus domestica
  • SE3020710
  • Mutator
  • MadM14
  • MDC001371.254:20982-21475
  • TATTTATTT
  • GAGAAAATTGTAGCAATASTCCCTCAACTTTAACCAAATTAGAGCAATAACTCCTCAACTAAAAATTTATG

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTATTT   A             AS   C            A    A        AC                    ATCAT  AT            C           C       G     G  A       CA  --    A         K      T YAAMG  -   TGCTACAA              ----  - GACCATTGCTTCAATTAGGTTAAAGTTGAGAGYCTATTGCTCCAAT
         GAG AAATTGTAGCAAT  TCC TCAACTTTAACC AATT GAGCAATA  TCCTCAACTAAAAATTTATG     TG  TCCTTAACTCAT AAAACGTGCAG TATGGTC TTTTT TC ACTCTGT  GA  TTCC TCAAAATGA TCATGT G     AC CAT        TTGGATTAAAGTTG    AG G                                              
         ||| |||||||||||||  ||| |||||||||||| |||| ||||||||  ||||||||||||||||||||     ||  |||||||||||| ||||||||||| ||||||| ||||| || |||||||  ||  |||| ||||||||| |||||| |     || |||        ||||||||||||||    || |                                              T
         CTT TTTGACATCGTTA  AGG AGTTGAAATTGG TTAA CTCGTTAT  AGGAGTTGATTTTTAAGTAC     AC  AGGAATTGAGTA TTTTGCACGTT ATACCAG AAAAG GG TGAGGCA  CT  AAGG AGTTTTATT AGTGCA C     TG GTG        GACCTAGTTTCCCG    TA C                                              
TTTATTTAT   C             CT   A            A    C        AA                    RGATC  -C            Y           Y       G     A  W       AA  TG    C         C      - ---AG  C   --TACTCC              TTTG  C TTTGGTTTACTTTTTTTAACATCGTTACCAGGGCGTTGAAATTGAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End