SE3020712

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_849
  • Malus domestica
  • SE3020712
  • Mutator
  • MadM48
  • MDC017495.197:1755-1971
  • ATGTTATTC
  • GGAAGAGGATCCTCTCCTAAGCTCAGGATGGGAATCCTTCTGACCACGAAATCCGGACCGTTCAAATTTAATCCAACGGTTGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTATTC                  A    C        A                   C    C                       G   TTATTATAA    T
         GGAAGAGGATCCTCTCCT AGCT AGGATGGG ATCCTTCTGACCACGAAAT CGGA CGTTCAAATTTAATCCAACGGTT CAA         CTTT 
         |||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||         |||| A
         CCTTCTCCTAGGAGAGGA TCGA TCCTACCC TAGGAGGACTGGTGCTTTA GCCT GCAGGTTTAAATTAGGTTGCCGA GTT         GAGA 
CTTATTGTA                  C    A        C                   A    T                       G   TGTCCCCCA    G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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