Plant MITE

SE3020713

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_850
Malus domestica
SE3020713
Mutator
MadM5
MDC010650.585:35940-36125
CAAAAATAG
GGAGAAATTTTTATTGTGACACGAACGCAGGTGGTACACYRTGTGTTTTTATATAAGTGGTG

Secondary structure and sequence

TSD TIR

5'

3'

CAAAAATA     -AA      T       --  A   C G         YR      T              KAAATTTTTAT  TTW     A
        GGAGA   TTTTTA TGTGACA  CG ACG A GTGGTACAC  TGTGTT TTATATAAGTGGTG           TT   AAGTT 
        |||||   |||||| |||||||  || ||| | |||||||||  |||||| ||||||||||||||           ||   ||||| T
        CCTCT   AAAAGT ACACTGT  GT TGC T CACCATGTG  GCACAG GATATGTTTACTAC           AA   TTCAA 
 ATAAAAA     CTA      T       CC  R   - M         GT      T              TCTATACACAC  TTT     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020713

CAAAAATAGGAGAAATTTTTATTGTGACACGAACGCAGGTGGTACACYRTGTGTTTTTATATAAGTGGTGKAAATTTTTATTTTTWAAGTTATTAACTTTTTAACACACATATCTCATCATTTGTATAGTGACACGTGGTGTACCACMTCGTRTGCCTGTCACATTGAAAAATCTCTCCAAAAATA

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