SE3020715

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_852
  • Malus domestica
  • SE3020715
  • Mutator
  • MadM10
  • MDC020532.133:12928-13126
  • TTATTTTTT
  • GGACTAGGATTATCTCCCCTCCTCTTTCCATCCACTTCCATCCCCTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTTT   C       A   C     -CTC     -A   AC    A         CTCACATTCTCTATTTT   TTTT CTTTCTATAAAAATTAATATAAGAT
         GGA TAGGATT TCT CCCTC    TTTCC  TCC  TTCC TCCCCTCCT                 GTC    T                         
         ||| ||||||| ||| |||||    |||||  |||  |||| |||||||||                 |||    |                          
         CCT ATCCTAA AGA GGGAG    AAAGG  AGG  AAGG AGGGGAGGA                 AAC    T                         
TTTTTTATT   T       G   A     AAAA     YA   GA    G         ---------------TA   ---- TGTCAGTTCCAATTTGGTGCAGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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