Plant MITE

SE3020717

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_854
Malus domestica
SE3020717
Mutator
MadM72
MDC007911.129:481-697
CATAGCTTT
AGCTTTGAAATTGGATCCTCTCCTGAGCAAGAGATCAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

CAT    T  -A                     A           CCTC  AAC                  C ATT  A       AA      TTGTTATAACTTT      G
   AGCT TG  AATTGGATCCTCTCCTGAGCA GAGATCAGGAT    CT   CCACTAACACGGGCCGTT G   TT ATCCAAC  CTACAA             TAGAAG 
   |||| ||  ||||||||||||||||||||| |||||||||||    ||   |||||||||||||||||| |   || |||||||  ||||||             |||||| A
   TCGA AC  TTAACCTAGGAGAGGACTCGT CTCTAGTCCTA    GA   GGTGATTGTGTCTGGCAA C   AA TAGGTTG  GATGTT             ATCTTC 
 TT    T  CC                     C           AAAA  CTA                  C CAT  C       CC      ------------T      T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020717

CATAGCTTTGAAATTGGATCCTCTCCTGAGCAAGAGATCAGGATCCTCCTAACCCACTAACACGGGCCGTTCGATTTTAATCCAACAACTACAATTGTTATAACTTTTAGAAGGATCTTCTATTTGTAGCCGTTGGATCAATACCCAACGGTCTGTGTTAGTGGATCAGAAAAATCCTGATCTCCTGCTCAGGAGAGGATCCAATTCCCATAGCTTT

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