SE3020719

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_856
  • Malus domestica
  • SE3020719
  • Mutator
  • MadM12
  • MDC013446.286:19213-19434
  • AATGAAAAG
  • GGGAAAGGATCCTCGCTGGATCTTTTCCTAAGAATCTTGTGATCTCACATGTTCATCGTATATTGTGCGATTAGAAATCATTTCAAAATTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AATGAAAAG                       -         A              CA                    A     AA     ---------   AA      AAWT
         GGGAAAGGATCCTCGCTGGATCT TTTCCTAAG ATCTTGTGATCTCA  TGTTCATCGTATATTGTGCG TTAGA  TCATT         TCA  ATTTAA    
         ||||||||||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||| |||||  |||||         |||  ||||||    T
         CCTTTTCCTAGGAGCGGCCTAGG AAAGGATTC TAGGACACTAGAGT  GCAAGTAGCATATAGCACGC AGTCT  AGTAA         AGT  TAAATT    
GAAAAGTAA                       G         C              AG                    C     AA     TCCATGATA   -A      AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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