SE3020721

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_858
  • Malus domestica
  • SE3020721
  • Mutator
  • MadM17
  • MDC015572.123:11800-11986
  • ATAAAACAT
  • ATGAGAAACACTAAGGAGACTCTCTCAAAGTGAGACTCTCCATGGACTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAAC        CA                   -   A      C        G CCAC            T       ----    T   TAA
       ATGAGAAA  CTAAGGAGACTCTCTCAAA GTG GACTCT CATGGACT T    CACCTCATCTTT TGGCACA    TTGT TTA   
       ||||||||  ||||||||||||||||||| ||| |||||| |||||||| |    |||||||||||| |||||||    |||| |||    
       TACTCTTT  GATTCCTCTGAGAGAGTTT CAC CTGAGA GTACCTGA A    GTGGAGTAGAAA ACCGTGT    GACA GGT   
TACAAAA        AC                   T   C      C        G --CA            C       TAAA    C   TGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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