Plant MITE

SE3020722

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_859
Malus domestica
SE3020722
Mutator
MadM32
MDC002768.343:956-1142
TTAATATAG
GAGTAATGATAGGAAGRCTAAATTTTTTAAATCAAAATGCAAATCAAATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAATATA        A    A  RC                  -A       C          TCATAAAT    -AACAAGCAC      CGAC
        GAGTAATG TAGG AG  TAAATTTTTTAAATCAAA  TGCAAAT AAATGATGTG        AAGA          GTTAAT    
        |||||||| |||| ||  ||||||||||||||||||  ||||||| ||||||||||        ||||          ||||||    A
        CTCATTAC ATCC TC  GTTTAAAAAATTTGGTTT  ACGTTTG TTTACTACAC        TTCT          TAATTA    
TATAATTA        G    C  TA                  AA       A          ----CAAC    AMTAACCTAA      MTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020722

TTAATATAGAGTAATGATAGGAAGRCTAAATTTTTTAAATCAAAATGCAAATCAAATGATGTGTCATAAATAAGAAACAAGCACGTTAATCGACACTTMATTAATAATCCAATMATCTTCAACCACATCATTTAGTTTGCAAATTTGGTTTAAAAAATTTGATCTCCCTAGCATTACTCATTAATAT

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