Plant MITE

SE3060727

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_864
Malus domestica
SE3060727
Mim
MadMi1
MDC015757.243:7308-7534
TATATAC
GGCCCTTTAACAAGAGGGATCCCCATTTTTAAAAAAAATGGGGACACCCTCTTGACCGTTGGATTAGCTTTAATGAAATTGTCTGGTTGAGATT

Secondary structure and sequence

TSD TIR

5'

3'

      TATATACA  --C    T                      -A                   CTT            -A                C           AAATCACA
              GG   CCTT AACAAGAGGGATCCCCATTTTT  AAAAAAATGGGGACACCCT   GACCGTTGGATT  GCTTTAATGAAATTGT TGGTTGAGATT        
              ||   |||| ||||||||||||||||||||||  |||||||||||||||||||   ||||||||||||  |||||||||||||||| |||||||||||         
              CC   GGAA TTGTTCTCCCTAGGGGTAAAAA  TTTTTTTACCCTTGTGGGG   CTGGCAACCTAA  TGAAATTACTTTAACA ACCAACTCTAA        
ATATATATCTATTA  TTA    C                      GA                   ---            AC                C           CACACCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3060727

TATATACAGGCCCTTTAACAAGAGGGATCCCCATTTTTAAAAAAAATGGGGACACCCTCTTGACCGTTGGATTAGCTTTAATGAAATTGTCTGGTTGAGATTAAATCACAGGCCACACAATCTCAACCACACAATTTCATTAAAGTCAAATCCAACGGTCGGGGTGTTCCCATTTTTTTAGAAAAATGGGGATCCCTCTTGTTCAAGGATTCCATTATCTATATATA

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