SE3040730

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_867
  • Malus domestica
  • SE3040730
  • CACTA
  • MadC1
  • MDC013053.267:26419-26787
  • TTA
  • ACACTATGTTTGGCTGAAGAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             C   -A     TTAAGATTAC    -   T    A  TG    ---    TGAAATGATGGAATTTTAATTTTTAGTATTTGTGAATTTTCTTATTTGGTTAACCTAAAAGAACAATGGAATTTAATACAGAATTTGTTATTTCTAAACTCTCAATCATAGAAATTGGAAAATGACACA
  ACACTATGTTTGG TGA  GAAGT          TAAG GAA TTTA AA  ACAA   AAAT                                                                                                                                 
  ||||||||||||| |||  |||||          |||| ||| |||| ||  ||||   ||||                                                                                                                                  
  TGTGATACAAACC ACT  CTTTA          TTTG ACC TTAA AT  CCAT   CAGT                                                                                                                                 
AT             T   CC     ----------    A   -    -  --    TTT    CTTAAATATTTAACTGTATGTGGTTAAGGGAACAAACCTAAGTATTTGTATCTTTAAATCTTAAAAGCGCACCTTTTTTTTGAACCTTAAACCCCGGAAGTTTAGGGTTCAAATTTAAAGTACATTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3