SE3020736

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_873
  • Malus domestica
  • SE3020736
  • Mutator
  • MadM4
  • MDC003132.484:10353-10523
  • TTAAAAAGG
  • AAAAGGATAATATTAGGGAGACTAAATTTGTAAACTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA      A    A                  T       TTTT  -AAA     -    C     --A   GATGATTG     TT
   AAAAGG TAAT TTAGGGAGACTAAATTTG AAACTAA    TG    ACTAA AGGA ATAAA   GTT        GTTTA  
   |||||| |||| |||||||||||||||||| |||||||    ||    ||||| |||| |||||   |||        |||||  A
   TTTTCC ATTA AATCTCTCTGATTTAAAC TTTGATT    AC    TGGTT TCCT TATTT   CAA        CAAAT  
AAA      C    C                  C       TACT  ACAG     A    -     GTG   -ATAGTTA     TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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