Plant MITE

SE3020749

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_886
Malus domestica
SE3020749
Mutator
MadM95
MDC013927.111:1788-1978
TTTTAAGTT
TTTAAGTTTGAGAAATGCTAAGGAAACTCTCTCAAAAGTGAGATTCTCTAAGGACTCTTTGTTACCTCATGTTTTTGGTACAATGTT

Secondary structure and sequence

TSD TIR

5'

3'

  T      TTT     A  C      A          AA   A         A   C    T          ------------       -  AC      TT
   TTTAAG   GAGAA TG TAAGGA ACTCTCTCAA  GTG GATTCTCTA GGA TCTT GTTACCTCAT            GTTTTTG GT  AATGTT  
   ||||||   ||||| || |||||| ||||||||||  ||| ||||||||| ||| |||| ||||||||||            ||||||| ||  ||||||   
   GAATTT   TTCTT AC ATTCCT TGAGAGAGTT  CAT TTGAGAGAT CCT AGAG CAGTGGAGTA            TAAGAGC CG  TTGCAA  
TTT      --T     C  K      C          -A   C         A   A    T          TCAAATTGCATT       A  -A      TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020749

TTTTAAGTTTGAGAAATGCTAAGGAAACTCTCTCAAAAGTGAGATTCTCTAAGGACTCTTTGTTACCTCATGTTTTTGGTACAATGTTTTATAACGTTAGCACGAGAATTTACGTTAAACTATGAGGTGACTGAGAATCCATAGAGAGTTCTACATTGAGAGAGTCTCCTTAKCACTTCTTTTTTAAGTTT

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