SE3050755

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_892
  • Malus domestica
  • SE3050755
  • PIF/harbinger
  • MadP7
  • MDC013369.381:5808-6046
  • TAA
  • AGGGCTCGTTTGGATGTGCTTTTAAAATGGCTGAAAGCGCTTTTAGAGAAAATGTTTTTGGGTTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                              C             A A       T       TT   ---    CACTTTAAGTGCTTTCTACAAGAAGCACCAGTTATGTGCTTCTTC
  AGGGCTCGTTTGGATGTGCTTTTAAAATGG TGAAAGCGCTTTT G GAAAATG TTTTGGG  CCA   AAAG                                             
  |||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||  |||   ||||                                             C
  TCCCGAGTAAACCTACACGAAAATTTTATT ACTTTCGTGAAAA C CTTTTAC AAAACCT  GGT   GAAT                                             
AA                              A             C A       T       -T   TAG    CACTTTTACGTTCATTTAGGACCTTTTAGTAAATCTCAAGAAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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