SE3050756

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_893
  • Malus domestica
  • SE3050756
  • PIF/harbinger
  • MadP2
  • MDC006782.381:245-648
  • TAA
  • AGAGCAACTCCACCCTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       C    C    A  --   CTCCCCCTGGCAATCCACCTTATTGAACAGTAACTGCCTTTAATGAATAGTAACTGCCATTAATGAACAGTAATTACTTTTTGCATCTCCACCCTTAGAGCCTTCCCCCTTGTAATAGGTAATAAAATTTAGTTTTTTTTGTTTGTTAAATAATACAAATAAAAAAAAATGGAAAT
  AGAGCAA TCCA CCTT GA  GCC                                                                                                                                                                                
  ||||||| |||| |||| ||  |||                                                                                                                                                                                 
  TCTCGTT AGGT GGAA CT  CAC                                                                                                                                                                                
AA       C    C    C  GT   GAACCCCCTGTCCCCTCTCTTTTCCCGGACTCCGGGCCACCTATTGGGAGGTCGGAACCTCTCGGGCTCACTCCCACCCTCGGGTTCGTGTTCCCCCCACCCCTTAACTGTCCGGACGTCGGGCTCCCGGTCCGTAAAAAAATAAAAAAACACAGTCGGGCTCCCGGACGTCGGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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