SE3020757

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_894
  • Malus domestica
  • SE3020757
  • Mutator
  • MadM55
  • MDC003598.473:1236-1450
  • ATCTTTTAA
  • GGGAAGAGATTCCCTTCGGATCTTTCTCACCAAAGTTACGCAATCAATTAATCCGAACCTTTGAAATTTTATCCAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTTTTAA          T                C                         C               T            CAAACAGGGAAC   TT
         GGGAAGAGAT CCCTTCGGATCTTTCT ACCAAAGTTACGCAATCAATTAATC GAACCTTTGAAATTT ATCCAACGGTTA            CTT  
         |||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||            |||   
         CCCTTCTCTA GGGAGGCCTAGAGAGG TGGTTTCGGTGTGTTAGTTAATTAG CTTGGGAACTTTAAA TAGGTTGCTAAT            GAA  
AATTTTCTA          -                A                         A               C            TTTAATAATATT   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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