SE3020762

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_899
  • Malus domestica
  • SE3020762
  • Mutator
  • MadM15
  • MDC009359.238:20525-20739
  • GTAATTCAT
  • GTAATTCATGAACCCAGATCCTCCCTGGATCTAAAAAAATAAGCCTAAGGATCAAATGATCCGGGTCATTGAAATTTGATCCAACAGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3'
   T    C      CC        C                -A                        TCA                CA       TTATTATAACTTTTAG   GC
  G AATT ATGAAC  AGATCCTC CTGGATCTAAAAAAAT  AGCCTAAGGATCAAATGATCCGGG   TTGAAATTTGATCCAA  GCTATAA                AGG  
  | |||| ||||||  |||||||| ||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||||||  |||||||                |||   
  C TTAA TGCTTG  TCTAGGAG GGCCTAGATTTTTTTG  TCGGATTCCTAGTTTACTAGGCCC   AACTTTAAATTAGGTT  CGATGTT                TCC  
TA -    -      AA        A                AC                        TAC                AC       --------------TA   CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End