SE3020763

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_900
  • Malus domestica
  • SE3020763
  • Mutator
  • MadM30
  • MDC014182.119:36143-36304
  • ATGATAGTG
  • GTGGTGCTATTCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
          ATGATA            A  CACCC        C  C                         A   ATCTTCAAT
                GTGGTGCTATTC CA     ATTTTTAC TC CACACACCCTTTTTAATTTTTGGCC TTG         
                |||||||||||| ||     |||||||| || ||||||||||||||||||||||||| |||         T
                CATCACGATAGG GT     TGAAAATG AG GTGTGTGGGGAGAGTTAAAAACCGG AGC         
CCATAAATTTTTATCC            C  -ATAT        A  A                         C   CWAACTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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