Plant MITE

SE3020765

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_902
Malus domestica
SE3020765
Mutator
MadM122
MDC019074.78:17215-17475
GTATGAGAT
ATGGAATTAGATCCTTTCCGGATCTCCTCACTGGGGATCCGAGGGATCAATGAATAATAATCGTTCATCAAAGATTGTATGGCCACAATTGAATATTTTTTTATATTTTCAGAAGTAAAGCA

Secondary structure and sequence

TSD TIR

5'

3'

GTATGAG                              C         G           A            C            A   C  C    GAA                -  GAA        GT
       ATGGAATTAGATCCTTTCCGGATCTCCTCA TGGGGATCC AGGGATCAATG ATAATAATCGTT ATCAAAGATTGT TGG CA AATT   TATTTTTTTATATTTT CA   GTAAAGCA  
       |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||| ||| || ||||   |||||||||||||||| ||   ||||||||   
       TGTCTTAATCTAGGAGAGGCCTAGGGGAGT ACCCCTAGG TCCCTAGTTAC TATTATTAGCAA TAGTTTCTAGCA ACC GT TTAA   ATAAAAAAATATAAAA GT   CGTTTTGT  
TAGAGTA                              A         G           G            A            C   A  A    AAA                A  --A        TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020765

GTATGAGATGGAATTAGATCCTTTCCGGATCTCCTCACTGGGGATCCGAGGGATCAATGAATAATAATCGTTCATCAAAGATTGTATGGCCACAATTGAATATTTTTTTATATTTTCAGAAGTAAAGCAGTTTTGTTTTGCATGAAAAATATAAAAAAATAAAAAATTATGACCACACGATCTTTGATAAACGATTATTATGCATTGATCCCTGGGATCCCCAATGAGGGGATCCGGAGAGGATCTAATTCTGTATGAGAT

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