Plant MITE

SE3020766

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_903
Malus domestica
SE3020766
Mutator
MadM20
MDC013445.131:10529-10747
CATCTCTGA
GGATTTGGATCCTCTCCTGRGCTAATGGAGAGGATCCTCCTGACCAAGTGTTATGAACCGTTGGATTTTTATCCAACGGTTATAA

Secondary structure and sequence

TSD TIR

5'

3'

CATCTCTGAC                   R     T  A                          A                       T     TTATTATAACTTTAAA   AC
          GGATTTGGATCCTCTCCTG GCTAA GG GAGGATCCTCCTGACCAAGTGTTATG ACCGTTGGATTTTTATCCAACGG TATAA                AGG  
          ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||                |||  C
          CCTAAACCTAGGAGAGGAC CGATT CC CTCCTAGGAGGACTGGTTCACAATAC TGGCAACCTAAAAGTAGGTTGCC ATGTT                TCC  
CAGTCTCTAC                   T     K  Y                          C                       T     --------------TG   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020766

CATCTCTGACGGATTTGGATCCTCTCCTGRGCTAATGGAGAGGATCCTCCTGACCAAGTGTTATGAACCGTTGGATTTTTATCCAACGGTTATAATTATTATAACTTTAAAAGGACCCACCTGTTTGTATCCGTTGGATGAAAATCCAACGGTCCATAACACTTGGTCAGGAGGATCCTCYCCKTTAGCTCAGGAGAGGATCCAAATCCCATCTCTGAC

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