Plant MITE

SE3020768

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_905
Malus domestica
SE3020768
Mutator
MadM1
MDC014076.289:9811-9998
ATGGCCTAA
GGCC

Secondary structure and sequence

TSD TIR

5'

3'

  AT    TAAA        A             -AAAA           G   A           --     T    -------------TA  A       TT
    GGCC    GAGAAATG TAAGGAGACTCTC     GTGGGACTCTT ATG ACTTTCTGTCA  TCACA GTTT               GC CAATATT  
    ||||    |||||||| |||||||||||||     ||||||||||| ||| |||||||||||  ||||| ||||               || |||||||   
    CTGG    CTCTTTAC ATTCCTCTGAGAG     TATCCTGAGAA TAC TGAGAGACAGT  AGTGT CAAA               CG GTTGTAA  
AAAT    --TA        G             AGTTG           G   C           GG     -    TTACAATTAAGGATA  -       TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020768

ATGGCCTAAAGAGAAATGATAAGGAGACTCTCAAAAGTGGGACTCTTGATGAACTTTCTGTCATCACATGTTTTAGCACAATATTTTATAATGTTGGCATAGGAATTAACATTAAACTGTGAGGTGACAGAGAGTCCATGAAGAGTCCTATGTTGAGAGAGTCTCCTTAGCATTTCTCATGGTCTAAA

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